Bioinformatics & Proteomics/ Genomics : iNquiry Suite

The program in Bioinformatics & Proteomics/Genomics maintains a suite of bioinformatics software on its 16-node Linux cluster. This suite, called "iNquiry", is a product of BioTeam, LLC, and is maintained by the Ohio Supercomputer Center and the BPG Program.

To get an account on the iNquiry suite, contact:

Ms. JoAnne Gray BPG Secretary 419-383-6883 joanne.gray@utoledo.edu

or

Dr. Robert M. Blumenthal BPG Program Director 419-383-5422 robert.blumenthal@utoledoedu

At this time, due to license restrictions on some of the software, only students, faculty and staff at UT and BioinfOhio Consortium partners are eligible for accounts.

To go to iNquiry, click here: iNquiry Suite at UT

To report an iNquiry problem, click here: Trouble@iNquiry

Programs included in iNquiry:

abiview	antigenic	backtranseq	banana	biosed
blast2	btblastall	btwisted	build_icm	cai
chaos	charge	checktrans	chips	cirdna
clustalw	clustalw_convert	codcmp	coderet	compseq
cons	cpgplot	cpgreport	cusp	cutseq
dan	degapseq	descseq	diffseq	digest
distmat	domainer	dotmatcher	dotpath	dottup
dreg	einverted	emma	emawse	eprimer3
equicktandem	est2genome	etandem	extractfeat	estractseq
findkm	fmtseq	freak	fuzznuc	fuzzpro
fuzztran	geecee	getorf	glimmer	glimmer_extract
helixtrunhelix	hmmalign	hmmbuild	hmmcalibrate	hmmconvert
hmmemit	hmmer2sam	hmmfetch	hmmpfam	hmmscore
hmmsearch	hmoment	html4blast	iep	infoalign
infoseq	interface	isochore	lindna	listor
loadseq	long_orfs	makehist	marscan	maskfeat
maskseq	matcher	megamerger	melting	merger
msbar	mwfilter	needle	newcpgreport	newcpgseek
newseq	sotseq	nrscope	nthseq	octanol
oddcomp	palindrome	pasteseq	patmatdb	patmatmotifs
pepcoil	pepinfo	pepnet	pepstats	pepwheel
pepwindow	pepwindowall	phiblast	olotcon	plotorf
polydot	preg	prettyplot	prettyseq	primersearch
profit	prophecy	prophet	pscan	psiblast
readseq	recoder	redata	remap	restover
restrict	revseq	scope	scopparse	seqmatchall
showalign	showfeat	showorf	showseq	shuffleseq
sigcleave	siggen	sigscan	silent	splitter
stretcher	stsearch	supermatcher	syco	tfscan
tmap	transeq	trimest	trimseq	vectorstrip
water	whichdb	wise2	wobble	wordcount
wordmatch	xblast