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BPG Databases

The Exon-Intron Database

Shepelev V., Fedorov A. Advances in the Exon-Intron Database. Briefings in Bioinformatics 2006, 7: 178-185. 

New 2007 Release

Species Name EID UID ILD
Human, build 36.1 hs36.p1.EID.tar.gz under construction under construction
Mouse, build 36.1 mm36p1.EID.tar.gz under construction under construction
Rat, build 4 rn4p1.EID.tar.gz under construction under construction
Sea Urchin under construction under construction under construction

Release of Exon-Intron Database, September 2005
Species name EID UID ILD
Human (GenBank 35.1) hs35p1.EID.tar.gz hs35p1.UID.tar.gz hs35p1.ILD.tar.gz
Mouse (GenBank 34.1) mm34p1.EID.tar.gz mm34p1.UID.tar.gz mm34p1.ILD.tar.gz
Rat (GenBank 3.1) rn3p1.EID.tar.gz rn3p1.UID.tar.gz rn3p1.ILD.tar.gz
Dog (GenBank 2.1) cfa2p1.EID.tar.gz cfa2p1.UID.tar.gz cfa2p1.ILD.tar.gz
Chicken (GenBank 1.1) gga1p1.EID.tar.gz gga1p1.UID.tar.gz gga1p1.ILD.tar.gz
Danio rerio (release Zv4) drzv4.EID.tar.gz drzv4.UID.tar.gz drzv4.ILD.tar.gz
C. elegans (GenBank 2003) ce2003.EID.tar.gz ce2003.UID.tar.gz ce2003.ILD.tar.gz
D. melanogaster (4.1) dm4p1.EID.tar.gz dm4p1.UID.tar.gz dm4p1.ILD.tar.gz
A. thaliana (2004) at2004.EID.tar.gz at2004.UID.tar.gz at2004.ILD.tar.gz
gb149 (original EID) gb149.EID.tar.gz gb132.tar.gz
MOID release 2 September 2005 (MOID_Sept05.tar.gz)
Instructions README_Sept05

 

Please cite the reference at the top of this page (Shepelev and Fedorov) when using the Exon-Intron Database in your research.

 

README - Explanations about new releases of Exon-Intron Database (EID)

SNO.pl - This program searches for conserved structures characteristic for C/D box snoRNA

TARGETmrna.pl - This program searches for the targets of snoRNA antisense elements among all mRNA sequences of human, mouse and rat

57snoRNA

Link to Alexei Fedorov home page

NOTE: original EID at www.mcb.harvard.edu/gilbert/EID was closed by the host

Questions or Comments:

Alexei Fedorov, Ph.D.
Assistant Professor, Department of Medicine
Head of Bioinformatics Lab
University of Toledo Health Science Campus
3000 Arlington Avenue
Toledo, OH 43614-5809

Phone: (419)-383-5270
Fax: (419)-383-3102
E -mail: alexei.fedorov@utoledo.edu

Page updated: June 12, 2008
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